Links 3/20/24

Links for you. Science:

Benchmarking of long-read assemblers for prokaryote whole genome sequencing
How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies
Tracing the origin of SARS-CoV-2 omicron-like spike sequences detected in an urban sewershed: a targeted, longitudinal surveillance study of a cryptic wastewater lineage
Surprise: An ‘Extraterrestrial’ Gadget Was Something More Familiar
Cats aren’t jerks. They’re just misunderstood. (gift link)
You’re not crazy. Spring is getting earlier. Find out how it’s changed in your town.

Other:

Mainstream media have no excuse to keep falsely saying Trump opposes cuts to Social Security and Medicare
Federal courts move against ‘judge-shopping’: The new policy is aimed at combating litigants’ attempts to direct their cases to specific judges.
Netanyahu Is Making Israel Radioactive (gift link)
It Sure Seems Like the Courts Have Placed Christianity Above Other Faiths
In states with laws targeting LGBTQ issues, school hate crimes quadrupled
NJ school district retracts email encouraging staff to teach about Ramadan in context of Israeli ‘genocide’ of Palestinians
‘Alarming’: One in four young people plan to leave Greater Boston in the next five years, report finds
On popular online platforms, predatory groups coerce children into self-harm
Republican women don’t care about rape victims
A DC Indie-Rock Musician Is Now CEO of Amtrak
How Donald Trump switched to defending TikTok. Two former White House aides tied to an investor with a stake in TikTok, including Kellyanne Conway, were involved in a campaign to persuade the former president
Donald Trump and Viktor Orbán: The American right’s most disturbing global alliance grows desperate
There’s new reason to think Trump still has classified documents
Courts, campaigns, and confidence in American democracy
Ron Klain Thinks The Biden ‘Alliance’ Is Strong Enough To Withstand Gaza And Trump
A Free Press Would Ask Donald Trump About His Plans for Cutting Social Security and Medicare
Capital Gains Hikes at Center of Biden’s Second-Term Tax Agenda
Make America Hungary Again: MAGA’s obsession with Orban reveals they want authoritarianism, not greatness
Tesla Gets Tagged With Once-Unthinkable Call: Sales Will Fall
The Story of the Boeing Whistleblower Found Dead Just Keeps Getting Weirder
TikTok You Don’t Stop
Trump’s MAGA movement is causing Republicans in Congress to hate each other
Why the Kate Middleton scandal just won’t die (my lulz here)
Why is it so hard to buy a Blu-ray?
Top Democrat Schumer calls for new elections in Israel, saying Netanyahu is an obstacle to peace
“Poor, poor pitiful me”: Was Martin Kulldorff fired by Harvard?

Posted in Lotsa Links | Comments Off on Links 3/20/24

The State of COVID in D.C.*: More Declining!

*And by D.C., I mean Alexandria, VA, because the publicly available Biobot D.C. data don’t seem to be collected anymore.

More good news:

Screenshot 2024-03-19 at 5.05.21 PM

With a decrease from 378 copies/ml to 272 copies/ml, we’re still three times higher than the mid-June 2023 nadir and at about a quarter of the January 2023 season peak. That probably means around 0.5-0.75 percent of people are currently infected (though that’s a very rough estimate because we’re not collecting the right prevalence data).

Anne Arundel County, MD doesn’t seem to be collecting data anymore, so we’ve lost those confirmatory data, though the Verily data for D.C. also suggest a decline.

Anyway, the prevalence is still high enough, such that if you’re at a large-ish gathering, it’s definitely a good idea to mask up, not just to protect yourself, but to protect others too. Remember, you’re not the weirdo if you’re still trying to avoid getting (re)infected.

Posted in COVID-19, DC | Comments Off on The State of COVID in D.C.*: More Declining!

Links 3/19/24

Links for you. Science:

Magpies swoop bald men more often, eight-year-old’s viral survey finds
Iron dysregulation and inflammatory stress erythropoiesis associates with long-term outcome of COVID-19
Scientists will not “just”: Individual scientists can’t solve systemic problems
Unifying fluidic excretion across life from cicadas to elephants (PEE THEORY)
Intrahost evolution leading to distinct lineages in the upper and lower respiratory tracts during SARS-CoV-2 prolonged infection
ONT-only accuracy: 5 kHz and Dorado

Other:

Disabled people’s exclusion from indoor spaces is a civil rights violation, not an annoyance
Are We Watching The Internet Die?
The Kansas Attorney General Doesn’t Want To Replace Lead Pipes? Come On, Man.
Retailers howled about theft last year. Why not now?
I No Longer Believe The Republican Party Will Ever Return To Normalcy. The MAGA-backed recall effort directed at Wisconsin’s Assembly leader Robin Vos over the 2020 election is just more proof.
It Matters That Mainstream Media Missed Katie Britt’s Lie
A Couple Ranchers Were Running Quite The Scam Out Of Colorado
Curious and fluent in cursive? The National Archives is looking for you
The 4 Big Questions the Pentagon’s New UFO Report Fails to Answer
Over 20 Anti-LGBTQ+ Bills Die In West Virginia, As Activists Celebrate Major Victories
From the Edges of a Broken World: In Israel, a translator tries to tread the line of empathy.
Millions of veterans get more health care benefits ahead of schedule
Less money, less house: How market forces are reshaping the American home
Most Libraries Will Only Be Open Five Days a Week Under Mayor Adams’s Budget
Magic Mushrooms Are Risky New Tool Touted by Executive Coaches (just say no CEO?)
Status Report on the Zaporizhzhia Nuclear Power Plant
Are Jews Safe in America? Not entirely, but name me a place where Jews are safer.
The Biden Administration Has Taken More Climate Action Than Any Other in History
The Woman Who Tried to Make Porn Safe for Feminism (gift link)
Shocking Online Manifesto Reveals Project 2025’s Link to a Coordinated ‘Christian Nationalism Project’
Trump’s allies have big plans to turn America into a fascist theocracy
‘License to kill’: Anti-abortion groups rage against the GOP: Some groups are running ads against longstanding GOP allies that use the same graphic imagery — blood, babies and scalpels — they have long deployed to oppose Democrats and the abortion-rights movement.
US Lawmaker Cited NYC Protests in a Defense of Warrantless Spying
Former Mar-a-Lago worker comes forward and describes moving materials in Trump classified docs case
Sanders, Van Hollen, Merkley, and Five Colleagues Urge President Biden to Enforce U.S. Law with Netanyahu
Vancouver’s new mega-development is big, ambitious and undeniably Indigenous

Posted in Lotsa Links | Comments Off on Links 3/19/24

D.C. Homicides: It’s the Guns

I realize that’s not a novel observation, but I was comparing the D.C. crime data for the year to date (Jan. 1, 2024 to Mar. 17, 2024) to the previous identical time period*, and I saw just how overwhelming the role of guns in determining the homicide rate is:

guns1

The top line is total homicides, the next line down is homicides with a gun, and the bottom line is homicides without guns. It’s all about guns. Every homicide surge is a homicide with a gun surge, and every homicide decline is a decline in gun homicides, while the baseline of non-gun homicides is fairly static**.

Like I said at the outset, this is not a novel finding (to say the least), but the data are just so fucking stark, I think they’re worth displaying. With a competent executive branch (not to mention if it were entirely under the control of the residents of the mainland colony), there would be some obvious policy remedies and policing strategies.

That said, despite Washington Post editorials, there is good news. For the year to date (Jan. 1, 2024 to Mar. 17, 2024), homicides have declined from 46 to 30. Gun homicides declined from 34 to 25, while non-gun homicides declined from twelve to five. Hopefully, that 27 percent decrease in gun homicides will increase, and this year will be less of an annus horribilis.

*Yes, I need new hobbies.

**There is a slight positive correlation between homicides with and without guns, but the relationship is so weak that the 95% confidence intervals cover everything from a horrible year to a great one. To put this perspective, in 2012, the year with the fewest homicides, there were 32 non-gun homicides. The following years had 32 or fewer non-gun homicides (without gun/with gun): 2012 (32/95), 2013 (22/81), 2016 (30/105), 2017 (28/87), 2020 (28/169), and 2022 (29/174).

Posted in Crime, DC | Comments Off on D.C. Homicides: It’s the Guns

Links 3/18/24

Links for you. Science:

A.I. Is Learning What It Means to Be Alive
Livestock industry co-opts academics to downplay its climate impact, study says
Deforestation, climate change may endanger North American lizards
On the impact of mass screening for SARS-CoV-2 through self-testing in Greece
Silicon Valley is pricing academics out of AI research
Scientists Discover 100 New Marine Species in New Zealand

Other:

3 COVID Experts on Why the CDC’s Isolation Guidelines Are Bad for Public Health
Four years of COVID: Fewer people are dying but the virus ‘is still with us’
My Robotic Doppelganger Is The Grim Face of Journalism’s Future!
Did Google, Facebook, and Amazon Endorse Jim Crow?
Reminder: Trump’s Last Year in Office Was a National Nightmare (gift link)
LGBTQ+ voters look a lot like swing voters
Biden hoped to be a peacemaker. Now, he knows he must be a warrior. (gift link)
Why you shouldn’t wear a green shirt on TV
Forget ‘polarization.’ It’s the GOP’s radicalization. (gift link)
Palantir’s NHS-stealing Big Lie
It shouldn’t take a lawsuit for D.C. to do right by disabled students: City officials have long known that unreliable school bus service is disrupting families and keeping children from arriving at school on time or at all
Former advisers sound the alarm that Trump praises despots in private and on the campaign trail
Why not require a civics test as a rite of passage for all Americans?
Automakers Are Sharing Consumers’ Driving Behavior With Insurance Companies
If Congress doesn’t act now many Americans might lose broadband access
Biden said Republicans oppose women’s rights — Katie Britt’s “tradwife” response proved him right
New York Times employees fighting over Chick-fil-A? Sounds about right.
Voter turnout, 2018-2022
Early polling of Biden’s State of the Union doesn’t quite match the hype (yes, but it backed off Ezra Klein, aka ‘David Brooks the Younger’, and other pundits, so it served a very important purpose)
Reporters Missed Katie Britt’s Huge Lie; What Else Are They Missing?
Soaring mobile-home rents anger Arizona voters
The untold story of Kickstarter’s crypto Hail Mary—and the secret $100 million a16z-led investment to save its fading brand
Trump floats ‘cutting’ retirement spending, drawing quick pushback from Biden
The ACLU Is Trying to Destroy the Biden NLRB. It is also trying to force more workers into mandatory arbitration.
Some journalists seem bored by the biggest story of our lifetimes
The Supreme Court’s War on Affirmative Action Was Never Just About Schools

Posted in Lotsa Links | Comments Off on Links 3/18/24

Why Was Biden Doing So Poorly?

During his State of the Union address, Navigator Research did one of those focus group thingees with a group of soft partisans and independents in the Phoenix, Arizona metro area. The results showed a huge (YOOGE!) swing for Biden when comparing their opinions before and after the speech:

Screenshot 2024-03-15 at 11.45.40 AM

And on abortion:

Screenshot 2024-03-15 at 11.45.54 AM

These are very large swings, but these aren’t super-high post-speech numbers; as best as I can tell, most experts think his post-speech ratings are par for the course. The real issue is how were his pre-speech numbers so bad? I don’t think this can be blamed on a bunch of lefty-libs (or full tilt leftists) shitposting online.

Brian Beutler makes a related point about Biden’s overall polling numbers (boldface mine):

This is why I’d still like the Biden campaign to be candid with the party rank-and-file about how we got to this point. Presumably being down two points in mid-March was never part of their plan. Why do they think it happened? Did Democrats make a mistake by treating Trump as though he’d entered exile, giving him wide berth to rehabilitate himself and smear Biden without pushback? And if that was a mistake, how do they plan to fix damage done over three years in the next few weeks or months?

I would go farther and ask who were the superbrain geniuses who thought of this failed strategy and how do we make sure they never work on Democratic campaigns ever again?

Posted in Democrats | 2 Comments

Links 3/17/24

Links for you. Science:

Will brie and Camembert cheeses go extinct? Here’s what scientists say.
‘Super Predator’: One Animal in Africa Instills Even More Fear Than Lions
Coywolves Are Taking Over Eastern North America
For the first time in centuries, a gray whale is spotted in New England
‘Monumental’ experiment suggests how life on Earth may have started
Voyager 1, First Craft in Interstellar Space, May Have Gone Dark

Other:

Why downtowns matter
‘He’s Looking For Dictatorship’: Joe Biden Rips Viktor Orbán’s Mar-A-Lago Visit
Most important aspect of Dartmouth vote to unionize is it represents a pathway for more athletes to be heard
New Study Suggests Anti-Asian Hate And Fear Remain High In New York City
A surge of illegal homemade machine guns has helped fuel gun violence in the US
Turn empty offices into little factories
‘It’s a War of Cruel Rich People. Israel’s Form of Combat in Gaza Is Unusually Wasteful’
Downtown needs an infusion of artists
‘I Couldn’t Just Sit at Home’: The Arab-Jewish Gaza Aid Convoy Carrying Food, and Hope
538 drops Rasmussen Reports from its analysis
We ignored AIDS. Let’s not repeat the mistake on long COVID (this is good, but there’s no call to ask policy makers how prevalent long COVID is among the vaccinated–which is what will drive policy)
Mitch McConnell’s billionaire sister-in-law Angela Chao made panicked last call before dying in ‘completely submerged’ Tesla on Texas ranch
There should be newspapers that we work at where we do this
34 weeks
Spurring Housing Development Near Transit through Federally Funded Land Acquisition
The Alabama IVF Ban Conversation Is Missing the Bigger Point
Elon Musk Has a Giant Charity. Its Money Stays Close to Home.
UnitedHealth Exploits an “Emergency” It Created
Pa.’s TikTok billionaire, Donald Trump, and the Selling of the President 2024
The Miracle Weight-Loss Drug Is Also a Major Budgetary Threat
COVID-19 is Still a Threat. So is Biden’s CDC.
The Sweet Science and the Sovereign Fund
How a Small Iowa Newspaper’s Website Became an AI-Generated Clickbait Factory
IVF makes a mockery of anti-choice extremists
The ‘Rule’ Against Ending Sentences With Prepositions Has Always Been Silly (gift link)
The Oldest President in History Just Gave the Fiercest State of the Union Address in History

Posted in Lotsa Links | Comments Off on Links 3/17/24

Links 3/16/24

Links for you. Science:

Artificial intelligence and illusions of understanding in scientific research
Study finds that we could lose science if publishers go bankrupt (study here; oddly, didn’t look for papers in PubMed Central)
A Rare Gray Whale, Believed Extinct in the Atlantic for 200 Years, Has Been Spotted off New England
‘Despair’: Argentinian researchers protest as president begins dismantling science
Tubby Labradors May Be at the Mercy of Their Genes, Not Just Too Many Treats. One in four Labrador retrievers carries a gene that tricks their brain into thinking they’re starving
The reckoning: Didier Raoult and his institute found fame during the pandemic. Then, a group of dogged critics exposed major ethical failings

Other:

What “Mandate for Leadership” Says About the GOP’s Governing Philosophy. Replacing checks and balances with authoritarianism
What I Learned When I Read 887 Pages of Plans for Trump’s Second Term
Inside A Secret Society Of Prominent Right-Wing Christian Men Prepping For A ‘National Divorce’
The Biden Plan to Ditch Netanyahu: The “come to Jesus moment” is already here, according to Israeli and U.S. sources.
Picking a Fight
A Trump judge slaps down Big Pharma’s attack on Biden’s drug price cuts
New York Times Accused of Wage Theft as Paper Prepares to Remedy Unpaid Overtime
A 7,000-Pound Car Smashed Through a Guardrail. That’s Bad News for All of Us.
Katie Britt’s kitchen was a bleak stand-in for a chilling conservative vision
UNRWA report says Israel coerced some agency employees to falsely admit Hamas links
Senator Brian Schatz Explains What Donald Trump’s “Fascism” Would Mean for America
The Fundie Baby Voice: As soon as Senator Katie Britt started speaking, I knew exactly who she is. She is so many of the pastor’s wives and Sunday School teachers I knew growing up in an Evangelical church. Be sweet. Obey.
Was Trump supporter Katie Britt caught in whopping lie about graphic sex trafficking story?
Don’t go in the kitchen. I’m delivering a State of the Union response. (gift link)
How Trump’s Justice Dept. Derailed an Investigation of a Major Company. The industrial giant Caterpillar hired William Barr and other lawyers to defuse a federal criminal investigation of alleged tax dodges.
Could parliamentary democracy save America?
Why Kelly Johnson Sounds Like Michelle Duggar
The Michael Jackson Movie Wants to Change Your Mind
Stop Stressing About Turning Off the Lights When Leaving the Room!
Moscow After Navalny
Kyrsten Sinema Does Us All a Favor
Biden’s Gaza Dilemma
Let the Presidential Election Mudslinging Begin!
DeSantis faces pushback in Florida as voters tire of war on woke. Conservative lawmakers rejected a host of new culture wars proposals in the legislature
Why schools should bring back eighth-grade algebra
SATs Are Switching To An Online Format For The First Time

Posted in Lotsa Links | Comments Off on Links 3/16/24

In Case You Missed It…

…a week of Mad Biologist posts:

Four Years Ago

He’s Just an Insider Threat

If Democrats Are Serious about Protecting Women in Red States Who Need Abortions…

The State of COVID in D.C.*: Another Decline

Posted in Weekly Roundup | Comments Off on In Case You Missed It…

Links 3/15/24

Links for you. Science:

The Value of Disease Surveillance
Meet the real-life versions of Dune’s epic sandworms
SARS-CoV-2 RNA can persist in blood, tissue, may play role in long COVID, research suggests
Study of 1 million US kids shows vaccines tied to lower risk of long COVID
The Burgeoning Bluesky Science Community: Now that Twitter has declined, this recently opened social media platform could be the next home for online science communicators.
He Wants Oil Money Off Campus. She’s Funded by Exxon. They’re Friends.

Other:

AIDS Denialism Is Back. We Can’t Let It Take Root.
Dr. John Gartner: The world is watching “a fundamental breakdown in Trump’s ability to use language”. Experts say Trump’s decline may be “caused by his incapacity to manage the stress caused by multiple indictments”
The Media Wants Liberals To Shut Up And Take It. Don’t.
Want to Punch Fascists? Fucking Fund Ukraine
“Tradwives” offer an alluring vision of right-wing Christianity — online warriors are fighting back
‘What the Hell Am I Watching’: Republicans Torch Their Own SOTU Rebuttal
Why Can’t People Be Normal About Sydney Sweeney?
The ‘Secret’ Gospel and a Scandalous New Episode in the Life of Jesus
The digital revolution has failed. The benefits of the internet are eroding. The AI boom is only accelerating their demise.
A Subway Plan Aimed to Ease Fears. The Blowback Was Immediate.
The Trump White House Pill Mill Story Is Getting Way Less Attention Than It Deserves
The Fallout of Trump’s Colorado Victory. Secretary of State Jena Griswold believes the state’s elections are safe and secure under her watch—even if she, herself, is now at risk.
Joe Biden Delivered a Knockout State of the Union Address
The First Part Of Joe Biden’s Speech Was SO Important
Greg Abbott and Ken Paxton Have Pulled The Wool Over The Eyes of Texas
The Court’s Colorado Decision Wasn’t About the Law
Oklahoma said to have the highest rate of ‘long COVID’ symptoms according to recent analysis
America’s split on whether the pandemic is over (thankfully, viruses pay attention to public opinion polls [/snark])
First Thoughts on the SOTU
AIPAC uncorks $100 million war chest to sink progressive candidates
Remembering the ‘72 Toyota RV-2, the Hip Wagon Camper That Was Ahead of Its Time
Willard Brinton’s “Graphic Presentation”
What Alabama’s IVF ruling reveals about the ascendant Christian nationalist movement
NNU slams CDC’s decision to end 5-day isolation for COVID-19
People Are Completely Clueless on How Much We’re Spending on Ukraine
Texas Democrat Who Turned on Trans Community Is Finding Out

Posted in Lotsa Links | Comments Off on Links 3/15/24