Category Archives: Publishing

How Does One Even Make an URL Like This?

I receive emails with journal tables of contents, including Emerging Infectious Disease. Here’s the url of an article provided in the article: https://lnks.gd/l/eyJhbGciOiJIUzI1NiJ9.eyJlbWFpbCI6ImZlbGRnYXJkQG5jYmkubmxtLm5paC5nb3YiLCJidWxsZXRpbl9saW5rX2lkIjoiMTE3Iiwic3Vic2NyaWJlcl9pZCI6IjM4ODkyOTQ3NSIsImxpbmtfaWQiOiIyNzIwMTc0MiIsInVyaSI6ImJwMjpkaWdlc3QiLCJ1cmwiOiJodHRwOi8vd3d3bmMuY2RjLmdvdi9laWQvYXJ0aWNsZS8yMS81LzE0LTExODRfYXJ0aWNsZSIsImJ1bGxldGluX2lkIjoiMjAxNTA0MjIuNDQzMzQzMzEifQ.y4oyeNbi_BwsWvqOtT6jNTmangPf1yPHG49FNMfZqtQ It resolves to this: http://wwwnc.cdc.gov/eid/article/21/5/14-1184_article Not clear to me why the first version is needed, or how … Continue reading

Posted in Computers, Internet, Publishing | 6 Comments

Why Open Access Matters

It turns out that Ebola, rather than being something never experienced before in Liberia, seems to have caused infections there previously (boldface mine): The conventional wisdom is wrong. We were stunned recently when we stumbled across an article by European … Continue reading

Posted in Public Health, Publishing, Viruses

The Closing of Microbial Genomics Data?

This post will have to be a little vague, but from my vantage point, I’m seeing two disturbing trends in terms of microbial genomics. For those who aren’t the cognoscenti, the weird thing about open access data arguments for anyone … Continue reading

Posted in Genomics, Public Health, Publishing | 1 Comment

All of Open Access Publishing’s Gall Can Be Divided Into Three Parts

There has been a recent spate of discussion about open access publishing, much of which seems to ignore a key element, money. For publishing in general, there are three models*: 1) authors pay the costs of publishing, open access or … Continue reading

Posted in Funding, NIH, NSF, Publishing | 1 Comment

The Paradox of Open Access

Vaughn Cooper makes an excellent point about open access (boldface mine): The paradox is therefore that the students at an institution that can most benefit from OA, and complain about lack of access, don’t appear to want to publish in … Continue reading

Posted in Funding, Publishing | 1 Comment

Plagarism and Open Science

While I’m on the fence regarding the calls for open data* (most recently by PLoSOne), this point by DrugMonkey is something that’s always bothered me (boldface mine): The second incident has to do with accusations of self-plagiarism based on the … Continue reading

Posted in Publishing | 4 Comments

One More Reason to Despise Supplemental Methods Sections

I’ve mentioned before how much I hate supplemental methods–where key parts of the methods are relegated to a secondary ‘paper’*. Because it’s not like we don’t have enough issues with reproducibility. But here’s one more reason (boldface mine): I have … Continue reading

Posted in Publishing